MIP Payroll

Paid#2 of 29 in Nonprofit Payroll Software

MIP Payroll: A strong fit for fund-accounted nonprofit payroll inside MIP Accounting. Ranked #2 of 29 in Nonprofit Payroll Software by our editors (8.8/10); pricing: Pricing on request; best for nonprofits needing fund-accounted payroll.

8.8/10★★★★☆Editor score

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MIP Payroll8.8 Visit MIP Payroll

At a glance

• Editor score
  8.8 / 10
• Pricing
  Pricing on request
• Best for
  Nonprofits needing fund-accounted payroll
• Tax filing included
  Yes
• Facts checked
  21 Sep 2026

• Where it wins

  • Allocates payroll costs by program, department, or grant
  • Supports federal and state tax reporting with W-2/W-3 e-filing
  • Offers payroll groups, timesheets, direct deposit, and custom payroll codes

• Where it doesn't

  • Pricing requires a demo or sales contact
  • Integration centers on MIP Accounting
  • Cloud and on-premise options add deployment decisions

Our verdict on MIP Payroll

MIP Payroll is a payroll module within MIP Accounting, a fund accounting system designed for nonprofits, schools, healthcare organizations, and government entities. Its strongest fit is for organizations that need payroll records and processing to connect directly with program, department, and grant accounting. Employee profiles cover pay, demographic, review, performance, I-9, and W-4 records, while custom payroll codes support earnings, benefits, deductions, and leave.

The payroll workflow is well aligned with nonprofit allocation needs. Organizations can process payroll by cycle, department, program, or another grouping, use default, regular, and supplemental timesheets, and distribute payroll costs by program, department, or grant. Direct deposit can send pay to one or multiple employee bank accounts. Federal and state withholding reports, W-2/W-3 production, and Aatrix e-filing extend the module beyond basic pay calculation. Pricing requires a demo or sales contact, so buyers should plan for a sales-led evaluation rather than selecting from published plan tiers.

Platform fit is centered on MIP Accounting: MIP Payroll integrates with MIP accounting entries and modules, and the broader system can be configured with additional accounting, HR, and employee-service modules. It is offered as cloud software or an on-premise deployment, giving organizations a choice of operating model but also requiring a deployment decision. MIP Payroll should be considered by nonprofit finance teams that need fund-accounted payroll, tax reporting, and grant-level labor-cost distribution in one MIP environment. Organizations seeking a payroll product evaluated around a broad external integration ecosystem may prefer an alternative.

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MIP Payroll pricing

MIP Payroll fact sheet

Alternatives to MIP Payroll

• PayFWDsA nonprofit-focused payroll platform built for grant allocation and multi-state compliance.9.2
• Patriot PayrollAffordable nonprofit payroll with exemption settings, contractor payments, and optional tax filing.8.5
• JBJustworks BenefitsA benefits-focused payroll and HR platform for nonprofits managing employee coverage.8.0

See all MIP Payroll alternatives →

MIP Payroll vs the competition

• MIP Payroll vs PayFWDs
• MIP Payroll vs Patriot Payroll
• JBMIP Payroll vs Justworks Benefits
• MIP Payroll vs Payroll4Free
• MIP Payroll vs ChurchSoftware Payroll
• MIP Payroll vs CDM+

Compare MIP Payroll with any tool side by side →

Featured on iTechGuides

MIP Payroll is listed in our Nonprofit Payroll Software directory. Add the badge to your site — it links back to this page.

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Reviewed by iTechGuides Editors · Editorial team · Updated Oct 2026

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Last updated 7 Oct 2026 · How we research and update