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Head-to-head · Check Printing Software

Checkrun vs Checkeeper

  • Updated Nov 2026
  • Both researched from official sources
  • 3 checks side by side
Higher score Checkrun #3 in Check Printing Software 9.1/10 15-day trial Free trial✓ 2 of 2 features Visit Checkrun
Checkeeper #7 in Check Printing Software 8.7/10 14-day trial Free trial✓ 2 of 2 features Visit Checkeeper

Checkrun leads on 0 checks, Checkeeper on 0, and 3 are even. Who comes out ahead on the 3 yes/no, price and count checks where we have data for both products. The editor score weighs everything else too.

Our verdict

  • Highest scoreCheckrun · 9.1/10
  • Free trialboth

Checkrun scores higher on our rubric for check printing software: 9.1 against 8.7 out of 10; our editors rank them #3 and #7.

On layout customization, Checkeeper gives you Both where Checkrun offers Customizable.

Checkrun is the better fit for quickBooks Online teams needing controls. Checkeeper is the better fit for web-based printing and mailing workflows.

  • Checkrun fits best

    QuickBooks Online teams needing controls

  • Checkeeper fits best

    Web-based printing and mailing workflows

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Side by side

Feature Checkrun 9.1/10 Visit ↗ Checkeeper 8.7/10 Visit ↗
At a glance
Editor score 9.1 8.7
Ranking #3 in Check Printing Software #7 in Check Printing Software
Best for QuickBooks Online teams needing controls Web-based printing and mailing workflows
Pricing model Paid Paid
Starting price $50/mo —
Free plan — —
Free trial 15 days 14 days
Free trial length 15 days 14 days · no card needed
Deployment Cloud, Mobile Cloud
Platforms Web, iOS, Android Web
Support Email, Live chat, Phone, Docs Email, Live chat · 24/7
Compliance 2FA SOC 2, HIPAA, PCI DSS
Integrations 1 integrations 4 integrations
Built for Small business, Mid-market Solo, Small business
Features Checkrun 2/2 · Checkeeper 2/2
MICR printing ✓ ✓
Blank-check support ✓ ✓
Specs
Delivery model Web Web
Accounting import Direct Direct
Layout customization Customizable Both
User limit Not checked yet Not checked yet
Our review
Pros
  • Two-way QuickBooks Online synchronization
  • MICR, blank-stock, and pre-printed check support
  • Approvals, ACH, Positive Pay, signatures, and audit trails
  • Prints MICR checks on blank paper or check stock
  • Supports batch printing, mailing, and multiple bank accounts
  • Connects with QuickBooks Online, FreshBooks, Xero, and Harvest
Cons
  • QuickBooks Desktop is not supported
  • $199 one-time implementation fee
  • Usage fees apply to printing, ACH export, and mailing
  • Requires a paid plan after the 14-day free trial
  • Platform access centers on web and API workflows
  • Mailing is an optional add-on rather than part of core printing
Our verdict

Checkrun is a cloud-based check printing and bill payment platform for businesses, accountants, and bookkeepers using QuickBooks Online. It connects through two-way QuickBooks Online synchronization and supports local and remote check…

Read the review →

Checkeeper is web-based check printing and mailing software for businesses, bookkeepers, accountants, and individuals. Its workflow covers customizable check templates, MICR font encoding, printing on blank paper or check stock, and…

Read the review →
  1. CheckrunCheck Printing Software 9.115-day trial
  2. CheckeeperCheck Printing Software 8.714-day trial

Strengths and trade-offs

  • Checkrun — where it wins

    • Two-way QuickBooks Online synchronization
    • MICR, blank-stock, and pre-printed check support
    • Approvals, ACH, Positive Pay, signatures, and audit trails

    Where it doesn't

    • QuickBooks Desktop is not supported
    • $199 one-time implementation fee
    • Usage fees apply to printing, ACH export, and mailing

  • Checkeeper — where it wins

    • Prints MICR checks on blank paper or check stock
    • Supports batch printing, mailing, and multiple bank accounts
    • Connects with QuickBooks Online, FreshBooks, Xero, and Harvest

    Where it doesn't

    • Requires a paid plan after the 14-day free trial
    • Platform access centers on web and API workflows
    • Mailing is an optional add-on rather than part of core printing

Checkrun vs Checkeeper: questions

Which is better for check printing software, Checkrun or Checkeeper?

Checkrun scores higher on our rubric for check printing software: 9.1 against 8.7 out of 10; our editors rank them #3 and #7.

How do Checkrun and Checkeeper compare?

All 3 checks we put side by side come out level: neither leads on any.

Do Checkrun and Checkeeper have a free plan?

Checkrun: No. Checkeeper: No.

More comparisons

All check printing software comparisons → · Full ranking →

Reviewed by iTechGuides Editors · Editorial team · Updated Nov 2026

Last updated · How we research and update