What’s actually slowing this PC down?
Pick the symptom - the matching free tool is one click away.
Patinae is a molecular visualization toolkit with documented desktop, Python/Jupyter, and browser interfaces. It is designed for viewing and analyzing molecular structures, scripting workflows, creating publication images, and embedding a viewer in other applications. The project describes its renderer as GPU-first, but its capability and performance statements are project documentation—not independent benchmark results.
What is Patinae?
Patinae is a programmable molecular viewer and toolkit for working with structural biology and related molecular data. Its documented uses include interactive research, structural analysis, scripting, notebooks, publication images, and embedding a viewer in another application. The project’s own positioning is “A fast, programmable molecular viewer for research, scripting, and the web.” That is the project’s description, not an independently measured performance claim. Patinae’s official repository describes the toolkit and its documented workflows.
Patinae presents itself as more than a single desktop program: the repository describes a native application, a Python package with a Jupyter widget, and a web viewer. It also documents reusable Rust crates and native plugins for extending the software.
Is Patinae PyMOL?
No. Patinae says it was called PyMOL-RS through version 0.3.x, but the current project is independent, is not official PyMOL software, and does not wrap PyMOL source. It documents familiar commands and session workflows where useful, but that does not make it PyMOL or establish complete compatibility.
The Tool Desk
Outbyte PC Repair FREERepair Windows errors before they cause bigger problemsFix Now →Outbyte Driver Updater FREEScan for outdated or missing drivers - takes under a minuteDriver Scan →#1 Best Overall
- Read Before You Buy — No Video Output: These adapters support charging and USB 2.0 data transfer, but cannot transmit video signals. Except for standard USB webcams (which use USB data only), they are not compatible with HDMI/DisplayPort cables, video-capable USB-C hubs, or docking stations with video output.
- Convert USB-A Ports to USB-C: Designed to connect USB-C earphones, cables, flash drives, card readers, and other USB-C accessories to standard USB-A ports. Plug-and-play with no drivers or software required.
- Aluminum Alloy Housing: Built with a sturdy aluminum alloy shell that aids in heat dissipation and protects against daily wear and scratches. Designed to maintain a stable and secure connection.
- Compact & Travel-Friendly: The ultra-compact design allows the adapter to stay plugged into your device without blocking adjacent ports or adding bulk, reducing wear and tear on your original USB ports.
- 12-Month Warranty: Backed by a 12-month manufacturer warranty for peace of mind. Designed to meet strict quality control standards for reliable everyday performance.
The repository says Patinae supports PRS v4 .prs sessions, can import legacy .pse sessions, and supports older PRS raw, v2, and v3 sessions. It also lists a prs-upgrade utility for named older project versions. Session migration can depend on the file and software version, so consult the current repository documentation before relying on a version-specific conversion workflow.
How do I install Patinae?
The best installation route depends on whether you need the desktop viewer, a Python/Jupyter workflow, or a browser-based viewer. The project points users to pre-built releases and documents a Python package install.
Rank #2
- 5-in-1 USB-C Hub: Experience comprehensive connectivity featuring a Power Delivery input, two USB-A 2.0 ports, a USB-A 3.0 port, and an HDMI port. (Note: The USB-C power delivery input port is only for connecting an external wall charger to power your laptop and cannot power peripheral devices.)
- 90W Pass-Through Charging: Achieve optimal charging with 90W pass-through power to your laptop, supported by a total input of 100W, with the hub reserving 10W for operational efficiency. (Note: Wall charger not included.)
- Quick Data Transfers: Accelerate your productivity with rapid data transfers using a high-speed 5Gbps USB 3.0 port and two 480Mbps USB 2.0 ports.
- 4K HDMI Display: Enhance your visual experience with a hub capable of delivering 4K resolution at 30Hz in both mirror and extend modes. Please note that this hub is compatible with MacBook (macOS 12 and newer), Windows 10 and 11, ChromeOS, and laptops equipped with DP Alt Mode and Power Delivery. Note: This device is not compatible with Linux.
- What You Get: Anker USB-C Hub (5-in-1, 4K HDMI), welcome guide, 18-month warranty, and our friendly customer service.
Use the native desktop application
Download a pre-built binary from the project’s releases page in its official repository. For a command-line example, the README shows opening a PDB file with patinae structure.pdb. Exact binary availability and instructions can change, so follow the release notes for the version and operating system you use.
Install the Python package
The documented package installation command is:
pip install patinaeThe repository also includes Python examples that use cmd for commands and a Viewer widget for Jupyter. Check the package documentation for the current import pattern and widget setup appropriate to your environment.
Rank #3
- Sleek 7-in-1 USB-C Hub: Features an HDMI port, two USB-A 3.0 ports, and a USB-C data port, each providing 5Gbps transfer speeds. It also includes a USB-C PD input port for charging up to 100W and dual SD and TF card slots, all in a compact design.
- Flawless 4K@60Hz Video with HDMI: Delivers exceptional clarity and smoothness with its 4K@60Hz HDMI port, making it ideal for high-definition presentations and entertainment. (Note: Only the HDMI port supports video projection; the USB-C port is for data transfer only.)
- Double Up on Efficiency: The two USB-A 3.0 ports and a USB-C port support a fast 5Gbps data rate, significantly boosting your transfer speeds and improving productivity.
- Fast and Reliable 85W Charging: Offers high-capacity, speedy charging for laptops up to 85W, so you spend less time tethered to an outlet and more time being productive.
- What You Get: Anker USB-C Hub (7-in-1), welcome guide, 18-month warranty, and our friendly customer service.
Build from source
The repository’s source-build guidance lists Rust for the core and desktop application, uv for Python package builds, and Node.js for web viewer and notebook widget assets. Building is the option for developers who need to work from source or on the project’s components; it is not necessary merely to try a published binary or Python package.
Does Patinae work in Jupyter?
Yes. The project documents a Python package and a Jupyter widget, allowing molecular viewing within a notebook workflow. Its examples use a Viewer widget alongside commands through cmd. This supports notebook-based interaction, but the exact setup and behavior may vary with package and notebook versions; use the current repository examples when configuring an environment.
Rank #4
- Dual Converters, Infinite Potential：Includes 2× USB C male to USB A female adapters and 2× USB A male to USB C female adapters. Perfect for a wide range of uses—tablets with Bluetooth keyboards, expand USB ports on macbook, and more. Two different converters for all your daily needs
- Next-Level 10Gbps & 3A Charging: No more slow 480Mbps, this usb to usb c adapter has a transfer speed of up to 10Gbps, allowing you to do more transferring in less time. This usb adapter fits both USB A and USB C charger, supporting up to 3A fast charging
- Upgraded Exquisite Craftsmanship: With an aluminum alloy housing and metal connector, the usbc to usb adapter is extremely durable and sturdy. Rigorously tested to withstand more than 10,000 times of plugging and unplugging, ensuring long-lasting performance
- Broad Compatible: The usb c to usb adapter widely supports all USB C/ USB A devices like laptops, tablets, cellphones, car chargers, and phone chargers. Such as compatible with MacBook Pro/Air 2023/2022, Thunderbolt 4/3 Devices,Apple MagSafe Watch 9/8/7/SE/Ultra, iPad Pro 2022/2021, Samsung Galaxy S23/S20/S10, and iPhone 17/16/15 Pro. Plug and play
- Please Note: To reach 10Gbps speed, keep the cable under 3.3 ft. For USB A Male to USB C adapters, try flipping the USB C connector. USB C Male to USB A adapters support bidirectional 10Gbps transfer within 3.3 ft
What molecular file formats does Patinae support?
The README lists support for the formats below, including compressed inputs. These are the project’s stated capabilities; the list is not an independent compatibility test, and it does not guarantee that every file variant or feature in a format will work identically.
| Data type | Formats listed by the project |
|---|---|
| Atomic and molecular structures | PDB, mmCIF, BinaryCIF, MOL2, SDF/MOL, XYZ, and GRO |
| Electron-density and related maps | CCP4/MRC |
| Molecular trajectories | XTC and TRR |
| Compressed inputs | gzip-compressed inputs |
What can you display and analyze with Patinae?
Patinae documents both molecular display options and structural-analysis operations. Which capabilities matter most depends on whether you are inspecting a single structure, comparing structures, examining map data, or automating repeated work.
Crashes, No Sound, or Screen Glitches?
Random freezes, missing sound and display glitches usually trace back to one bad driver. Find and replace yours safely.Free scan · under a minutePC Slower Than It Used to Be?
A free scan shows the junk files, broken settings and background clutter dragging Windows down - then fixes them in one click.Free scan · Windows 10 & 11Best Value
- 5-in-1 Connectivity: Equipped with a 4K HDMI port, a 5 Gbps USB-C data port, two 5 Gbps USB-A ports, and a USB C 100W PD-IN port. Note: The USB C 100W PD-IN port supports only charging and does not support data transfer devices such as headphones or speakers.
- Powerful Pass-Through Charging: Supports up to 85W pass-through charging so you can power up your laptop while you use the hub. Note: Pass-through charging requires a charger (not included). Note: To achieve full power for iPad, we recommend using a 45W wall charger.
- Transfer Files in Seconds: Move files to and from your laptop at speeds of up to 5 Gbps via the USB-C and USB-A data ports. Note: The USB C 5Gbps Data port does not support video output.
- HD Display: Connect to the HDMI port to stream or mirror content to an external monitor in resolutions of up to 4K@30Hz. Note: The USB-C ports do not support video output.
- What You Get: Anker 332 USB-C Hub (5-in-1), welcome guide, our worry-free 18-month warranty, and friendly customer service.
Representations and selections
Documented representations include spheres, sticks, lines, cartoon, ribbon, surfaces, mesh, dots, labels, and density maps. Selection expressions can target features such as chains, atom names, polymers, solvent, or atoms near a specified region. Together, representations and selections provide ways to isolate and inspect parts of a molecular scene.
Structural analysis and maps
The README lists Kabsch superposition and CE structural alignment, collections of distance, angle, and dihedral measurements, crystallographic symmetry expansion, and geometry-based secondary-structure assignment. For map work, it documents electron-density map loading and contouring. These descriptions establish the operations the project documents, not their accuracy or performance on a particular dataset.
Which Patinae interface should you choose?
- Desktop: Choose the native application for interactive structure viewing and analysis without building a notebook or embedding a web component.
- Python and Jupyter: Choose the package and widget when viewing should sit alongside notebook code or scripted analysis.
- Browser and embedding: Choose the web viewer when the viewer needs to run in a browser or be incorporated into a web experience. The project describes this viewer as based on WebAssembly and WebGPU.
- Development and extension: Explore the Rust plugins and reusable crates if you need to extend the toolkit or build on its components.
What should you check before adopting Patinae?
The project describes Patinae as GPU-first and provides renderer memory profiles named performance, balanced, lite, and manual:<MiB>. It says the profile is selected when the renderer is created; changing it requires recreating the renderer, usually by restarting the application or viewer. These profile names and configuration notes do not specify a particular GPU requirement or a measured memory footprint.
Before making Patinae part of a research or publishing workflow, check the details that affect your own files and environment:
Do these 3 things before closing this tab:
1Scan for outdated or missing drivers - takes under a minute2Repair Windows errors before they cause bigger problems3Fix the driver behind crashes, sound loss and screen glitches- Whether your specific structures, maps, or trajectories load as expected.
- Whether the documented representations, selections, and analyses cover your workflow.
- Whether you need to import or export particular session files, especially when migrating older sessions.
- Whether your users need desktop, notebook, or browser access.
- Whether the project’s current platform and renderer instructions fit your systems.
The repository names the BSD 3-Clause license. Review the license and current project terms for your intended use. The repository is the primary source for Patinae’s stated features, installation directions, and license; it is not an independent review or benchmark.
Quick Recap
Product prices and availability are accurate as of the date/time indicated and are subject to change. Any price and availability information displayed on Amazon at the time of purchase will apply.
