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When an AI agent cannot read Jira or Confluence, check the failure in this order: identify whether the site is Cloud or Data Center, verify the agent’s identity and authentication route, confirm token or app scopes, then check product and content permissions. A successful login or basic API response does not prove the agent can read a particular project, space, or page.

Start by identifying the failing access layer

Before changing credentials or permissions, capture the details needed to distinguish authentication from authorization and URL errors:

  • Deployment: Atlassian Cloud or Data Center.
  • Identity used by the agent: a user, service account, OAuth app, or Data Center application link.
  • Authentication method and token type.
  • Exact request URL, HTTP method, status code, and response body.
  • The target project, space, page, or other content the agent is trying to retrieve.

Use a minimal read-only request to test access, and redact tokens and personal data from logs, tickets, and examples. Choose the Cloud or Data Center path below based on the actual deployment; their integration settings are not interchangeable.

Troubleshoot Atlassian Cloud service-account requests

Route scoped tokens through the Atlassian API gateway

For Atlassian Cloud service accounts using scoped API tokens, requests use api.atlassian.com and the site’s Cloud ID. A site-specific URL is not the documented route for scoped-token requests. The endpoint patterns are https://api.atlassian.com/ex/jira/{cloudId}/... and https://api.atlassian.com/ex/confluence/{cloudId}/.... See Atlassian’s 401 Unauthorized error when service account accesses Jira or Confluence API and Scoped API Tokens in Confluence Cloud documentation.

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Atlassian documents these minimal checks:

  • Jira: GET /rest/api/3/myself, using the Jira gateway route and Cloud ID.
  • Confluence: GET /wiki/rest/api/space, using the Confluence gateway route and Cloud ID.

A 200 response confirms that the request’s route, token, and applicable scopes work for that check. It does not establish access to every project, space, or page the agent may need.

If the request returns 401 Unauthorized

Check the authentication and routing details before changing content permissions:

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  1. Confirm the service account is active and the token is valid, has not expired, and is being passed in the format the integration expects.
  2. Verify that the token type is supported by the integration. Some integrations expect classic tokens and may not support scoped tokens; confirm compatibility with the integration vendor.
  3. Check that the request uses the correct Cloud ID, product gateway route, and API path.
  4. Confirm the token has the required scope for the endpoint.
  5. Run the matching minimal Jira or Confluence request above, then inspect the returned status and body.

Atlassian lists scoped service-account token expiration as configurable from 1 to 365 days; this is a configuration range, not a guarantee that a particular token remains valid. Review Manage API tokens for service accounts for token and account checks.

If the request returns 403 Forbidden or content is missing

A valid token can still belong to an identity that lacks product or content access. Check these boundaries separately:

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  1. Product access and provisioning: Confirm that the account has access to Jira or Confluence and has completed any required first-login provisioning. For Confluence Cloud, Atlassian recommends signing out fully and signing in again after account-provisioning or product-access changes before retesting.
  2. Organization controls: Check applicable IP allowlisting, SSO, or other organization restrictions.
  3. Groups and scopes: Confirm the account’s group membership and that the token has the required read scope.
  4. Target permissions: Check Jira project permissions or Confluence space permissions for the agent’s identity.
  5. Content restrictions: For Confluence, inspect restrictions on the requested page and any inherited parent content.

Atlassian’s User Can’t Access Confluence Cloud and Confluence Cloud Access Denied guidance separates account, product, space, and content checks. A user may be allowed into a space but blocked from an individual page; an inherited parent restriction can also affect access. See Troubleshoot access problems to content for inherited permissions.

Check OAuth apps and request URL construction

“Your site admin must authorize this app”

This prompt indicates an app-approval issue, not necessarily a problem with the agent’s API token. Ask a site administrator to authorize the Cloud app, then confirm the app requests the scopes it needs and its implementation actually uses them. App authorization and an API token’s scopes are distinct access layers. Atlassian explains this prompt in “Your site admin must authorize this app” error in Atlassian Cloud apps.

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“Unauthorized; scope does not match” on Jira search

Validate the exact URL, including slash placement around the query string. Atlassian documents one Jira Cloud case in which a search path ending in search/? caused a scope-mismatch response; removing the slash to use search? fixed that specific URL-formatting issue. Treat this as a targeted check, not a general fix for every OAuth error. See oAuth app throwing error Unauthorized scope does not match.

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Troubleshoot Jira–Confluence links in Data Center

For Data Center, investigate the application link between Jira and Confluence rather than applying Cloud scoped-token instructions. Verify that the link reports connected and uses the intended OAuth configuration. If the failure persists, check reciprocal allowlists, custom SSO or authenticator configuration, and the Jira and Confluence logs.

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Atlassian’s procedure for a Jira Roadmap macro returning 401 is specific to Confluence Data Center and Jira Software Data Center 9.0 and later; use it only when that product and version context matches the failure: How to fix 401 unauthorized error loading Jira Roadmap macro in Confluence Data Center.

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Match the symptom to the next check

Observed symptom Check first Then
401 from a Cloud scoped-token request Token type and validity, Cloud ID, gateway route, required scope, and integration support Run the documented minimal endpoint; then check account status and product access.
403 from Confluence API Gateway route and Cloud ID, read scope, product access, provisioning, groups, and organization restrictions Check space permissions, page restrictions, and inherited parent restrictions.
App-authorization prompt Whether a site administrator approved the app and which scopes it requests Have the site admin authorize it and confirm the implementation uses the required scopes.
Jira search reports scope mismatch Exact request path and slash placement before the query string For the documented case, remove the slash immediately before ?.
Data Center Jira–Confluence macro returns 401 Application-link status and OAuth configuration Check reciprocal allowlists, SSO customization, logs, and whether the documented procedure applies to the versions in use.
Agent can read a Confluence space but not a page Page restriction and inherited parent restrictions Ask a space administrator or content editor with permission to inspect the specific content restrictions.

Confirm the fix and escalate safely

  1. After each change, retry the exact request that failed, using the same identity, method, URL, and target content.
  2. Compare both the HTTP status and returned content. A successful basic endpoint is not a substitute for testing the original project, space, or page.
  3. If access remains blocked, provide the administrator or Atlassian Support with the endpoint, method, status, response body, relevant request metadata, and applicable logs. Remove tokens and personal data before sharing.

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