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For an Indian GST-registered business, reconcile sales invoices to GSTR-1, outward tax liability to GSTR-3B and tax paid, and purchase invoices to GSTR-2B before checking the input tax credit (ITC) claimed in GSTR-3B. Keep the same GSTIN and tax period on both sides of each comparison: a supplier’s filing delay, an amendment, a credit or debit note, or an incorrect invoice field can each create a different kind of mismatch and require a different correction route.

Which records should you reconcile?

These checks answer separate questions. A sales invoice appearing correctly in GSTR-1 does not, by itself, establish that the outward liability was reported and paid correctly. Likewise, an invoice being absent from one GSTR-2B period does not, on its own, establish that the supplier never filed it or that ITC is unavailable.

Reconciliation Compare What it checks
Outward supplies Sales invoice and credit/debit note register against GSTR-1 for the same GSTIN and period Whether the outward-supply statement includes the relevant invoices, notes, amendments, and summarized supply details. GST Portal GSTR-1 FAQ
Outward liability and payment Liability from GSTR-1 or IFF against GSTR-3B or GSTR-3BQ and tax paid Whether the reported outward liability and payment align. A difference beyond the portal’s predefined limit may generate a DRC-01B intimation; the limit is not stated in the cited official guidance summary. GST Portal DRC-01B guidance
Purchase documents Purchase invoices against GSTR-2B for the relevant period Whether supplier-filed documents appear in the statement. Filing timing can place a document in a later GSTR-2B period than its invoice date. GST Portal GSTR-2B FAQ
ITC claimed Eligible ITC supported by purchase records and GSTR-2B against ITC claimed in GSTR-3B Whether the claim aligns with the available statement and applicable eligibility checks. An ITC difference between GSTR-2B and GSTR-3B may be addressed through DRC-01C. GST Portal DRC-01C guidance

How to identify the cause of a mismatch

Start with the source records and the portal data rather than changing a return as soon as a number differs. The following is a practical matching checklist based on the fields and amendment procedures described in the GST Portal guidance; it is not a formally prescribed portal checklist.

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  1. Match the GSTINs and return periods. Check the same taxpayer and period on both sides before comparing amounts.
  2. Match invoice number and date, supplier or recipient GSTIN, taxable value, tax rate and amount, place of supply, and supply category.
  3. Check credit and debit notes, and distinguish original entries from amended entries. A note or amendment can explain a difference that would otherwise look like a missing or duplicated invoice.
  4. Compare the GSTR-1 summary and resulting outward liability with GSTR-3B and tax paid. Treat invoice matching and liability/payment reconciliation as separate checks.
  5. For purchases, check whether the supplier filed the document and inspect the appropriate GSTR-2B period. Do not infer that ITC is absent solely because an invoice date does not match the period in which the document appears.

Why an invoice may be missing from GSTR-2B

GSTR-2B is based on supplier-filed documents and other specified inputs, so the date printed on a purchase invoice does not determine by itself which monthly statement will contain it. The GST Portal’s examples explain that documents can appear in a later GSTR-2B according to the supplier’s filing window, regardless of the document’s issue date; those examples illustrate the workflow and are not a current filing calendar. Check the supplier’s filing and the relevant statement periods before treating an invoice as omitted or an ITC claim as incorrect. See the GST Portal GSTR-2B FAQ.

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How to correct a GSTR-1 mismatch

Before filing GSTR-1

For a draft statement, the GST Portal says uploaded invoice details can be modified or deleted before filing. Add or amend the records, generate the summary, inspect that summary, and then file the statement. The portal guide also says e-invoice details update into GSTR-1 within a period of two days. See the GSTR-1 creation guide.

After filing, before filing GSTR-3B for the same period

GSTR-1A is an optional facility to add missed records or amend records for the same tax period. The GST Portal FAQ says it becomes available after GSTR-1 is filed or its due date, whichever is later, and can be furnished before GSTR-3B for that period is filed. The FAQ says the changes flow into the taxpayer’s GSTR-3B. For recipients, ITC for records added or amended through GSTR-1A is reflected in the next tax period’s GSTR-2B. See the GST Portal GSTR-1 FAQ.

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For an error from an earlier period

The GSTR-1 workflow includes amendment tables for earlier-period invoices and notes. For a relevant amended invoice, the portal says only the differential liability is payable in the current tax period; the applicable amendment table depends on the record type. The GSTR-1 FAQ gives a previous-financial-year cutoff of 30 November of the following financial year, but its page includes historical examples. Verify the statutory provision, return period, any extension notifications, and record type before relying on that date. See the GST Portal GSTR-1 FAQ.

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What to do when GSTR-1 and GSTR-3B liability differ

First identify the source of the difference: an omitted or amended outward record, a credit or debit note, a summary error, or a difference in reported liability or tax paid. Then compare the relevant period’s GSTR-1 or IFF liability against GSTR-3B or GSTR-3BQ, using the portal data and underlying records. A difference beyond the portal’s predefined limit may generate DRC-01B.

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The GST Portal DRC-01B guidance says to submit the reconciliation in Part B through the portal. It also warns that failing to file the response can prevent filing GSTR-1 or IFF for a subsequent tax period. The cited guidance summary does not state the numerical threshold, so check the current official portal material rather than relying on an assumed amount. Read the DRC-01B guidance.

What to do when GSTR-2B and GSTR-3B ITC differ

Separate a document-timing issue from an ITC claim mismatch. Check whether the supplier filed the invoice, whether it appears in a later GSTR-2B, and whether the amount claimed in GSTR-3B aligns with the relevant records and applicable ITC treatment. The GST Portal identifies DRC-01C as the process for a difference between GSTR-2B ITC availability and ITC claimed in GSTR-3B, with a Part B response. The available official guidance establishes that process, but not further procedural details here; consult the current portal notice and instructions for the case at hand. See the GST Portal DRC-01C guidance.

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Keep a reconciliation trail

Retain the invoice or note, the corresponding portal statement or return data, the reason for the difference, and the correction or response made. This makes it easier to distinguish a corrected data-entry error from a supplier filing that appears in a later statement, and to support a response when a portal intimation is issued. For preparation, the GST Portal recognizes third-party ASP applications through GSPs as one workflow, but no particular vendor’s features, security, or price are established by the cited official material. See the GST Portal GSTR-1 creation guide.

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