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Claude Code’s “done” message is not evidence that a change is safe. Before accepting or merging its work, review the permissions it used, inspect the diff and commands, run relevant project checks, and use a development container or virtual machine when code or tools are untrusted. Tests and model self-review can help find problems; neither certifies code as secure.

What “verified” should mean

A useful handoff records what changed, which commands and checks ran, what they found, what a person reviewed, and what remains uncertain. This is a practical workflow based on Anthropic’s guidance, not a formal security certification or a universal process prescribed by Anthropic.

Keep the evidence distinct: permissions limit what Claude Code may do; human review examines what it actually did; tests check selected behavior. None of these alone guarantees security. Anthropic’s security guidance assigns users responsibility for examining code and commands and cautions that no system is immune to every attack. Anthropic’s Claude Code security guidance

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Run a security verification loop

  1. Set a narrow boundary

    Start in the intended repository. Review the project’s permission configuration and allow only the files, tools, and actions needed for the task. If you want analysis before edits or command execution, use plan mode. Permission controls establish boundaries, not correctness. Anthropic documents permission configuration and plan mode in its permission settings guidance and CLI reference.

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  2. Ask for a reviewable proposal

    Ask Claude Code to describe the intended change, identify the files it expects to touch, and list checks it plans to run. Use that explanation to focus your review; it is not independent confirmation that the change is safe.

  3. Inspect the diff and actions

    Review the actual diff, not just the summary. Look closely at authentication and authorization logic, secrets handling, dependency changes, build or install scripts, configuration, and other critical files. Inspect commands before approving them and review what was run afterward, especially commands that modify files, access credentials, install packages, or contact external services. Anthropic explicitly places responsibility for examining proposed code and commands on the user. Security guidance

  4. Run checks that match the project

    Run the relevant test suite, linting, type checks, and available security analysis. Confirm which commands ran and whether they passed; ask Claude Code to compare results with explicit acceptance criteria, then verify the output yourself. Tests can reveal defects within their scope, but they do not cover every path or threat. Anthropic’s prompting and best-practices guidance supports checking work against test criteria; it does not define one checklist that proves every project secure.

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  5. Contain untrusted execution

    For untrusted repositories, scripts, or interactions with external web services, consider running the work in a development container or virtual machine. Isolation adds setup overhead, but can limit the consequences of risky execution. Review each MCP server separately: Anthropic says users configure MCP servers and that Anthropic does not manage or audit them. Check a server’s provenance, permissions, and source-controlled configuration before enabling it. Security guidance

  6. Report evidence and remaining uncertainty

    Close the task with the changed files, checks and outcomes, review performed, and unresolved risks. Describe what was actually verified; do not turn a successful test run or Claude Code’s self-review into a claim that the code is safe.

Choose permissions and isolation for the risk

Less restrictive settings can reduce interruptions, but increase the impact of an unintended or harmful action. Select controls according to the repository and actions involved, rather than treating convenience as a security guarantee.

Approach Trade-off Use it when
Read-only or plan-first work Limits changes before you have reviewed the approach, but requires a later approval or edit step. You are exploring an unfamiliar repository or want to review a plan before execution.
Narrowly allowed operations Reduces repeated prompts for known, bounded actions while retaining review for other operations. The task has predictable commands and file access that you can scope deliberately.
Broad automatic permissions Offers convenience but can increase the consequences of an unintended action. Only when the environment and consequences are understood and appropriate safeguards are in place.
Development container or VM Adds setup and workflow overhead, while providing an isolation layer for execution. Work involves untrusted code, scripts, or external tool interactions.

Anthropic’s CLI reference labels its permission-bypass flag, “Skip permission prompts (use with caution).” Avoid using a bypass as a substitute for reviewing commands or creating an appropriate execution boundary. See the official CLI reference for current options and wording.

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Keep setup and installation practices current

Claude Code’s setup and permission behavior can change. Check Anthropic’s setup documentation for current installation steps and update behavior. That page says Claude Code updates itself by default and warns against sudo npm install -g because of permission and security risks; follow the current official instructions rather than relying on an old command or guide.

What a successful check can—and cannot—establish

  • Permission prompts: show where Claude Code is asking to act under the configured rules; they do not establish that an action is harmless.
  • Diff review: can expose unexpected edits, risky logic, or sensitive-file changes; it depends on a reviewer examining the full change.
  • Tests, linting, and type checks: provide evidence about the cases and rules they cover; passing results do not prove the absence of vulnerabilities.
  • Isolation: can reduce exposure from untrusted execution; it does not replace reviewing code, permissions, and tool connections.

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